PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G252900.1
Common NameB456_001G252900, LOC105771782
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 135aa    MW: 15291.1 Da    PI: 9.235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G252900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-192171255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f t eeAa+a+++a+ +++g
  Gorai.001G252900.1 21 RYRGIRRRP-WGKFAAEIRDPTRNG--TRLWLGTFETVEEAARAYDRAAFAFRG 71
                        69*******.**********98887..***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-232180IPR016177DNA-binding domain
PROSITE profilePS5103224.9612179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-312180IPR001471AP2/ERF domain
CDDcd000186.48E-312180No hitNo description
PfamPF008471.2E-132171IPR001471AP2/ERF domain
SMARTSM003802.9E-372185IPR001471AP2/ERF domain
PRINTSPR003673.5E-112233IPR001471AP2/ERF domain
PRINTSPR003673.5E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEASQRGKRK MKNEMETGGV RYRGIRRRPW GKFAAEIRDP TRNGTRLWLG TFETVEEAAR  60
AYDRAAFAFR GQSAILNFPN EFQCQNPSFP ASSSCNSVGR VNPQRGGSEV IEFEYLDNKL  120
LEDLLETQQN MHGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-281979363ATERF1
3gcc_A4e-281979363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448630.15e-97PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2QVT46e-97A0A0D2QVT4_G
STRINGPOPTR_0005s24450.11e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-32ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]